YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPC3A_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTFGYRANA LLTFAVTALA FICAIASFSD KFSNQNPSAE IQILNINRFK KQSHGNDEVS  60
   61 LTLDISADLQ SLFTWNTKQV FVFVAAEYET PKNSLNQVSL WDAIIPAKEH AKFRIQVSNK 120
  121 YRFIDQGQNL RGKDFNLTLH WHVMPKTGKM FADKIVLPGY SLPDAYR

Type	Start	End	Confidence
Signal Peptide	1	26	0.85
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	167	0.98