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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SKU5_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFKILLLV FFVNISFCFA ADPYSFYNFE VSYITASPLG VPQQVIAING KFPGPTINVT  60
   61 TNENLVVNVR NKLDEGLLLH WNGIQQRRVS WQDGVLGTNC PIPPKWNWTY EFQVKDQIGS 120
  121 FFYFPSLHFQ RASGGFGSFV VNPRAIIPVP FSTPDGDITV TIGDWYIRNH TALRKALDDG 180
  181 KDLGMPDGVL INGKGPYRYN DTLVADGIDF ETITVHPGKT YRLRVSNVGI STSLNFRIQG 240
  241 HNLVLAESEG SYTVQQNYTS LDIHVGQSYS FLVTMDQNAS SDYYIVASAR VVNETIWRRV 300
  301 TGVGILKYTN SKGKAKGQLP PGPQDEFDKT FSMNQARSIR WNVSASGARP NPQGSFKYGS 360
  361 INVTDVYVLR NMPPVTISGK RRTTLNGISF KNPSTPIRLA DKLKVKDVYK LDFPKRPLTG 420
  421 PAKVATSIIN GTYRGFMEVV LQNNDTKMQS YHMSGYAFFV VGMDYGEWTE NSRGTYNKWD 480
  481 GIARSTIQVY PGAWSAILIS LDNPGAWNLR TENLDSWYLG QETYVRVVNP DENNKTEFGH 540
  541 PDNVLYCGAL SKLQKPQKVS SSASKSIGFT SLSMVVMALV MMMMLQH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle