YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVKSALGD MVITFLWVIL SATFGIQTAA IVSAVGFHGI TWAPLVISTL VVFVSISIFT  60
   61 VIGNVLGGAS FNPCGNAAFY TAGVSSDSLF SLAIRSPAQA IGAAGGAITI MEMIPEKYKT 120
  121 RIGGKPSLQF GAHNGAISEV VLSFSVTFLV LLIILRGPRK LLAKTFLLAL ATVSVFVVGS 180
  181 KFTRPFMNPA IAFGWAYIYK SHNTWDHFYV YWISSYTGAI LSAMLFRIIF PAPPLVQKKQ 240
  241 KKA

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	35	0.87
Non-Cytoplasmic	36	44	0.58
Transmembrane Helix	45	67	0.87
Cytoplasmic	68	76	0.65
Transmembrane Helix	77	98	0.55
Non-Cytoplasmic	99	134	0.76
Transmembrane Helix	135	155	0.93
Cytoplasmic	156	164	0.78
Transmembrane Helix	165	185	0.90
Non-Cytoplasmic	186	207	0.94
Transmembrane Helix	208	230	0.91
Cytoplasmic	231	243	0.93