YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF  60
   61 TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG AAGGALAIME FIPEKYKHMI 120
  121 GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT 180
  181 GPAMNPAIAF GWAYMYSSHN TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	33	0.90
Non-Cytoplasmic	34	42	0.70
Transmembrane Helix	43	65	0.87
Cytoplasmic	66	88	0.57
Transmembrane Helix	89	109	0.67
Non-Cytoplasmic	110	131	0.87
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	161	0.81
Transmembrane Helix	162	182	0.91
Non-Cytoplasmic	183	204	0.92
Transmembrane Helix	205	227	0.94
Cytoplasmic	228	240	0.98