YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY132_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA  60
   61 SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE ELDRENLANR QKPGCAKGSG 120
  121 VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE 180
  181 TGNSEQIFQK AIQEQGRGQV MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE 240
  241 MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK 300
  301 NKSA

Type	Start	End	Confidence
Cytoplasmic	1	275	0.57
Transmembrane Helix	276	296	0.96
Non-Cytoplasmic	297	304	0.50