YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY131_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLLKGSLE FSRDRSNRSD IESGHGPGNS GDLGLSGFFK KVQEIEKQYE KLDKHLNKLQ  60
   61 GAHEETKAVT KAPAMKSIKQ RMERDVDEVG RISRFIKGKI EELDRENLEN RTKPGCGKGT 120
  121 GVDRTRTATT IAVKKKFKDK ISEFQTLRQN IQQEYREVVE RRVFTVTGQR ADEEAIDRLI 180
  181 ETGDSEQIFQ KAIREQGRGQ IMDTLAEIQE RHDAVRDLEK KLLDLQQVFL DMAVLVDAQG 240
  241 EMLDNIENMV SSAVDHVQSG NNQLTKAVKS QKSSRKWMCI AILILLIIII ITVISVLKPW 300
  301 TQKNGA

Type	Start	End	Confidence
Cytoplasmic	1	276	0.80
Transmembrane Helix	277	297	0.94
Non-Cytoplasmic	298	306	0.69