YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY125_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK  60
   61 TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN ANSRNVPGCG PGSSTDRTRS 120
  121 SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN 180
  181 FLQKAIQEQG RGQILDTISE IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE 240
  241 SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK

Type	Start	End	Confidence
Cytoplasmic	1	269	0.80
Transmembrane Helix	270	293	0.90
Non-Cytoplasmic	294	298	0.66