YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY121_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE  60
   61 LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK KAKMIKVKLE ALDRANAANR 120
  121 SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP 180
  181 DERTLDRLIS TGESERFLQK AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD 240
  241 MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV 300
  301 VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR

Type	Start	End	Confidence
Cytoplasmic	1	285	0.93
Transmembrane Helix	286	306	0.95
Non-Cytoplasmic	307	346	0.82