YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY111_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG  60
   61 LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL RKAKSIKSKL EEMDKANKEI 120
  121 KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE 180
  181 MIEKIITDNA GGEEFLTRAI QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA 240
  241 VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV 300
  301 IPIITSFSSS

Type	Start	End	Confidence
Cytoplasmic	1	283	0.94
Transmembrane Helix	284	305	0.95
Non-Cytoplasmic	306	310	0.77