YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP29B_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASASSLAL SSFNPKSLPF GVSRPASVSL LSPSLSFKLN SDSVSFSIAA KWNSPASRFA  60
   61 RNVAITSEFE VEEDGFADVA PPKEQSFSAD LKLFVGNLPF NVDSAQLAQL FESAGNVEMV 120
  121 EVIYDKITGR SRGFGFVTMS SVSEVEAAAQ QFNGYELDGR PLRVNAGPPP PKREDGFSRG 180
  181 PRSSFGSSGS GYGGGGGSGA GSGNRVYVGN LSWGVDDMAL ESLFSEQGKV VEARVIYDRD 240
  241 SGRSKGFGFV TYDSSQEVQN AIKSLDGADL DGRQIRVSEA EARPPRRQY

Type	Start	End	Confidence
Signal Peptide	1	19	0.73
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	289	0.97