YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RL4A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS  60
   61 KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM CRGGRMFAPT KIWRRWHRRV 120
  121 NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG 180
  181 AYDDAEKAKN SIGIRPGKGK MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER 240
  241 LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN 300
  301 SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL 360
  361 AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK WLGASQ

Type	Start	End	Confidence
Cytoplasmic	1	123	0.53
Transmembrane Helix	124	144	0.50
Non-Cytoplasmic	145	406	0.99