YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIR2A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLKEGQGR DMEEGESEEP LLMAQNQRFT MFPIRYKSIW EMYKKAEASF WTAEEVDLST  60
   61 DVQQWEALTD SEKHFISHIL AFFAASDGIV LENLAARFLN DVQVPEARAF YGFQIAMENI 120
  121 HSEMYSLLLE TFIKDSKEKD RLFNAIETIP CISKKAKWCL DWIQSPMSFA VRLVAFACVE 180
  181 GIFFSGSFCA IFWLKKRGLM PGLTFSNELI SRDEGLHCDF ACLLYSLLQK QLPLEKVYQI 240
  241 VHEAVEIETE FVCKALPCDL IGMNSNLMSQ YIQFVADRLL VTLGCERTYK AENPFDWMEF 300
  301 ISLQGKTNFF EKRVGEYQKA SVMSNLQNGN QNYEFTTEED F

Type	Start	End	Confidence
Non-Cytoplasmic	1	172	0.65
Transmembrane Helix	173	194	0.88
Cytoplasmic	195	341	0.72