YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAATAVVP PAAAATTATA TDDNLQSSDS SSPADAVNRL IHAFSQRQQH LLDKTVPHVL  60
   61 YRWIACLCVV LIYIVRVYFV EGFYIITYAI GIYLLNLIIA FLSPQEDPEA SLTSGGSLPT 120
  121 RRSDEYRPFV RRLPEFKFWL SIIRAFIIGF MMTFFEVFDV PVFWPILLFY WVMLFFLTMR 180
  181 KQIQHMIKYR YVPFSFGKKQ YGKKPAPTES SE

Type	Start	End	Confidence
Cytoplasmic	1	58	0.97
Transmembrane Helix	59	77	0.95
Non-Cytoplasmic	78	83	0.73
Transmembrane Helix	84	103	0.93
Cytoplasmic	104	135	0.97
Transmembrane Helix	136	155	0.92
Non-Cytoplasmic	156	161	0.76
Transmembrane Helix	162	180	0.93
Cytoplasmic	181	212	0.98