YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSGGDSGS MATPVQKKVH EAWRVYQYYL DKTTPHSTNR WIGTLVFFLI YCLRVYSIHG  60
   61 FYIISYGLGI YLLNLLIGFL SPLVDPELEV SDGATLPTRG SDEFKPFIRR LPEFKFWYSM 120
  121 TKAFCIAFLM TFFSVFDVPV FWPILLCYWV VLFVLTMRRQ IAHMIKHKYI PFSIGKQKYS 180
  181 GRKSSANSGG GSRAD

Type	Start	End	Confidence
Cytoplasmic	1	40	0.83
Transmembrane Helix	41	58	0.78
Non-Cytoplasmic	59	61	0.54
Transmembrane Helix	62	84	0.76
Cytoplasmic	85	113	0.82
Transmembrane Helix	114	134	0.79
Non-Cytoplasmic	135	139	0.70
Transmembrane Helix	140	158	0.92
Cytoplasmic	159	195	0.96