YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESGGDSGS VATPVQQRAH EAWRIYQHYL DKTTPHANYR WIGTLVVALI YCLRVYYIQG  60
   61 FYIIAYGLGI YLLNLLIGFL SPLVDPEAGG VSDGPSLPTR GSDEFKPFIR RLPEFKFWYS 120
  121 MTKAFCIAFL MTFFSVFDVP VFWPILLCYW IVLFVLTMRR QIAHMIKYKY IPFSFGKQKY 180
  181 GGRSSSGSRA D

Type	Start	End	Confidence
Cytoplasmic	1	36	0.91
Transmembrane Helix	37	58	0.80
Non-Cytoplasmic	59	62	0.69
Transmembrane Helix	63	84	0.86
Cytoplasmic	85	114	0.87
Transmembrane Helix	115	135	0.83
Non-Cytoplasmic	136	140	0.71
Transmembrane Helix	141	159	0.92
Cytoplasmic	160	191	0.95