YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.95
Transmembrane Helix	83	104	0.70
Non-Cytoplasmic	105	125	0.75
Transmembrane Helix	126	148	0.75
Cytoplasmic	149	215	0.96
Transmembrane Helix	216	236	0.92
Non-Cytoplasmic	237	253	0.86
Transmembrane Helix	254	274	0.93
Cytoplasmic	275	281	0.85
Transmembrane Helix	282	303	0.92
Non-Cytoplasmic	304	331	0.86
Transmembrane Helix	332	351	0.94
Cytoplasmic	352	360	0.70
Transmembrane Helix	361	384	0.86
Non-Cytoplasmic	385	403	0.87
Transmembrane Helix	404	430	0.81
Cytoplasmic	431	454	0.84
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	484	0.72
Transmembrane Helix	485	506	0.92
Cytoplasmic	507	511	0.78
Transmembrane Helix	512	533	0.92
Non-Cytoplasmic	534	540	0.77
Transmembrane Helix	541	561	0.92
Cytoplasmic	562	581	0.83
Transmembrane Helix	582	599	0.78
Non-Cytoplasmic	600	611	0.60
Transmembrane Helix	612	633	0.72
Cytoplasmic	634	827	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIEEGSSN NSIRRVGTGS SDRRWVDGSE VDSETPLFSE IRDRDYSFGN LRRRLMKKPK  60
   61 RADSLDVEAM EIAGSHGHNL KDLSLLTTLG IAFQTLGVVY GDMGTSPLYV FSDVFSKVPI 120
  121 RSEVDVLGAL SLVIYTIAVI PLAKYVFVVL KANDNGEGGT FALYSLICRY AKVNKLPNQQ 180
  181 PADEQISSFR LKLPTPELER ALGIKEALET KGYLKTLLLL LVLMGTSMII GDGILTPAMS 240
  241 VMSAMSGLQG EVKGFGTNAL VMSSIVILVA LFSIQRFGTG KVGFLFAPVL ALWFFSLGAI 300
  301 GIYNLLKYDF TVIRALNPFY IVLFFNKNSK QAWSALGGCV LCITGAEAMF ADLGHFSVRS 360
  361 IQMAFTCVVF PCLLLAYMGQ AAYLTKHPEA SARIFYDSVP KSLFWPVFVI ATLAAMIASQ 420
  421 AMISATFSCV KQAMALGCFP RLKIIHTSKK RIGQIYIPVI NWFLMIMCIL VVSIFRSTTH 480
  481 IANAYGIAEV GVMMVSTVLV TLVMLLIWQT NIFLALCFPL IFGSVETIYL LAVLTKILEG 540
  541 GWVPLVFATF FLTVMYIWNY GSVLKYQSEV RERISMDFMR ELGSTLGTIR IPGIGLLYNE 600
  601 LVQGIPSIFG QFLLTLPAIH STIIFVCIKY VPVPVVPQEE RFLFRRVCPK DYHMFRCIAR 660
  661 YGYKDVRKED SRVFEQLLIE SLEKFLRCEA LEDALESTLN DFDPDRVSVA SDTYTDDLMA 720
  721 PLIHRAKRSE PEQELDSEVL PSSSVGSSME EDPALEYELA ALREATDSGL TYLLAHGDVR 780
  781 AKKNSIFVKK LVINYFYAFL RRNCRAGAAN LTVPHMNILQ AGMTYMV