YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.99
Transmembrane Helix	52	73	0.90
Non-Cytoplasmic	74	93	0.91
Transmembrane Helix	94	116	0.89
Cytoplasmic	117	182	0.98
Transmembrane Helix	183	206	0.89
Non-Cytoplasmic	207	220	0.80
Transmembrane Helix	221	241	0.92
Cytoplasmic	242	248	0.84
Transmembrane Helix	249	270	0.91
Non-Cytoplasmic	271	299	0.79
Transmembrane Helix	300	320	0.83
Cytoplasmic	321	327	0.59
Transmembrane Helix	328	351	0.84
Non-Cytoplasmic	352	370	0.76
Transmembrane Helix	371	397	0.79
Cytoplasmic	398	421	0.77
Transmembrane Helix	422	442	0.87
Non-Cytoplasmic	443	450	0.81
Transmembrane Helix	451	472	0.92
Cytoplasmic	473	478	0.75
Transmembrane Helix	479	500	0.92
Non-Cytoplasmic	501	507	0.81
Transmembrane Helix	508	527	0.95
Cytoplasmic	528	540	0.84
Transmembrane Helix	541	563	0.84
Non-Cytoplasmic	564	577	0.76
Transmembrane Helix	578	600	0.66
Cytoplasmic	601	792	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARVEAATM GGEIDEEESD ERGSMWDLDQ KLDQSMDEEA GRLRNMYREK KFSALLLLQL  60
   61 SFQSLGVVYG DLGTSPLYVF YNTFPHGIKD PEDIIGALSL IIYSLTLIPL LKYVFVVCKA 120
  121 NDNGQGGTFA LYSLLCRHAK VKTIQNQHRT DEELTTYSRT TFHEHSFAAK TKRWLEKRTS 180
  181 RKTALLILVL VGTCMVIGDG ILTPAISVLS AAGGLRVNLP HISNGVVVFV AVVILVSLFS 240
  241 VQHYGTDRVG WLFAPIVFLW FLSIASIGMY NIWKHDTSVL KAFSPVYIYR YFKRGGRDRW 300
  301 TSLGGIMLSI TGIEALFADL SHFPVSAVQI AFTVIVFPCL LLAYSGQAAY IRRYPDHVAD 360
  361 AFYRSIPGSV YWPMFIIATA AAIVASQATI SATFSLVKQA LAHGCFPRVK VVHTSRKFLG 420
  421 QIYVPDINWI LMILCIAVTA GFKNQSQIGN AYGTAVVIVM LVTTLLMTLI MILVWRCHWV 480
  481 LVLIFTVLSL VVECTYFSAM LFKIDQGGWV PLVIAAAFLL IMWVWHYGTL KRYEFEMHCR 540
  541 VSMAWILGLG PSLGLVRVPG VGLVYTELAS GVPHIFSHFI TNLPAIHSVV VFVCVKNLPV 600
  601 YTVPEEERFL VKRIGPKNFH MFRCVARYGY RDLHKKDDDF EKRLFESLFL YVRLESMMEG 660
  661 GCSDSDDYSI CGSQQQLKDT LGNGNENENL ATFDTFDSIE SITPVKRVSN TVTASSQMSG 720
  721 VDELEFINGC RDAGVVHIMG NTVVRARREA RFYKKIAIDY VYAFLRKICR EHSVIYNVPQ 780
  781 ESLLNVGQIF YV