YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT10_ARATH, PT1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.91
Transmembrane Helix	50	70	0.58
Non-Cytoplasmic	71	83	0.62
Transmembrane Helix	84	106	0.67
Cytoplasmic	107	173	0.80
Transmembrane Helix	174	196	0.89
Non-Cytoplasmic	197	210	0.65
Transmembrane Helix	211	231	0.91
Cytoplasmic	232	238	0.67
Transmembrane Helix	239	263	0.86
Non-Cytoplasmic	264	289	0.71
Transmembrane Helix	290	308	0.89
Cytoplasmic	309	316	0.51
Transmembrane Helix	317	338	0.88
Non-Cytoplasmic	339	360	0.67
Transmembrane Helix	361	387	0.79
Cytoplasmic	388	411	0.70
Transmembrane Helix	412	432	0.83
Non-Cytoplasmic	433	440	0.80
Transmembrane Helix	441	463	0.91
Cytoplasmic	464	468	0.77
Transmembrane Helix	469	490	0.92
Non-Cytoplasmic	491	497	0.79
Transmembrane Helix	498	517	0.95
Cytoplasmic	518	532	0.81
Transmembrane Helix	533	555	0.86
Non-Cytoplasmic	556	572	0.71
Transmembrane Helix	573	590	0.60
Cytoplasmic	591	787	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRVESSIG GGEIDEEGDE RGSMWDLDQS LDQPMDEEAG RLRNMYREKL SFQSLGVVYG  60
   61 DLGTSPLYVF YNTFPRGIKD PEDIIGALSL IIYSLTLIPL LKYVFVVCKA NDNGQGGTFA 120
  121 LYSLLCRHAK VSTIPNQHRT DEELTTYSRT TFHERSFAAK TKRWLENGTS RKNALLILVL 180
  181 VGTCMVIGDG ILTPAISVLS AAGGLRVNLP HINNGIVVVV AVVILVSLFS VQHYGTDRVG 240
  241 WLFAPIVFLW FLFIASIGMF NIWKHDPSVL KAFSPVYIFR YFKRGGQDRW TSLGGIMLSI 300
  301 TGIEALFADL SHFPVSAVQF AFTVIVFPCL LLAYSGQAAY LRKYPHHVED AFYQSIPKRV 360
  361 YWPMFIIATA AAIVASQATI SATFSLIKQA LAHGCFPRVK VVHTSRKFLG QIYVPDINWI 420
  421 LMILCIAVTA GFKNQNQIGN AYGTAVVIVM LVTTLLMMLI MILVWRCHWV LVLLFTLLSL 480
  481 VVECTYFSAV LFKVNQGGWV PLVIAAAFLV IMYVWHYGTL KRYEFEMHSK VSMAWILGLG 540
  541 PSLGLVRVPG IGLVYTELAS GVPHIFSHFI TNLPATHSVV IFVCVKNLPV YTVPQEERFL 600
  601 VKRIGPKNFH MFRCVARYGY RDLHKKDDDF EKRLFESLFL FLRLESMMEG CSDSEDYSVC 660
  661 GSQQRQSRDG VNGNGNEIRN VSTFDTFDSI ESVIAPTTTK RTSHTVTGSS QMSGGGDEVE 720
  721 FINGCRDAGV VHIMGNTVVR ARREARFYKR IAIDYVYAFL RKICRENSAI FNVPQESLLN 780
  781 VGQIFYV