YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSQ1_ARATH, PSBQ...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMGGLHGA SPAVLEGSLK INGSSRLNGS GRVAVAQRSR LVVRAQQSEE TSRRSVIGLV  60
   61 AAGLAGGSFV QAVLADAISI KVGPPPAPSG GLPGTDNSDQ ARDFALALKD RFYLQPLPPT 120
  121 EAAARAKESA KDIINVKPLI DRKAWPYVQN DLRSKASYLR YDLNTIISSK PKDEKKSLKD 180
  181 LTTKLFDTID NLDYAAKKKS PSQAEKYYAE TVSALNEVLA KLG

Type	Start	End	Confidence
Cytoplasmic	1	55	0.51
Transmembrane Helix	56	75	0.53
Non-Cytoplasmic	76	223	0.96