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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSKR1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVHRFCVIV IFLTELLCFF YSSESQTTSR CHPHDLEALR DFIAHLEPKP DGWINSSSST  60
   61 DCCNWTGITC NSNNTGRVIR LELGNKKLSG KLSESLGKLD EIRVLNLSRN FIKDSIPLSI 120
  121 FNLKNLQTLD LSSNDLSGGI PTSINLPALQ SFDLSSNKFN GSLPSHICHN STQIRVVKLA 180
  181 VNYFAGNFTS GFGKCVLLEH LCLGMNDLTG NIPEDLFHLK RLNLLGIQEN RLSGSLSREI 240
  241 RNLSSLVRLD VSWNLFSGEI PDVFDELPQL KFFLGQTNGF IGGIPKSLAN SPSLNLLNLR 300
  301 NNSLSGRLML NCTAMIALNS LDLGTNRFNG RLPENLPDCK RLKNVNLARN TFHGQVPESF 360
  361 KNFESLSYFS LSNSSLANIS SALGILQHCK NLTTLVLTLN FHGEALPDDS SLHFEKLKVL 420
  421 VVANCRLTGS MPRWLSSSNE LQLLDLSWNR LTGAIPSWIG DFKALFYLDL SNNSFTGEIP 480
  481 KSLTKLESLT SRNISVNEPS PDFPFFMKRN ESARALQYNQ IFGFPPTIEL GHNNLSGPIW 540
  541 EEFGNLKKLH VFDLKWNALS GSIPSSLSGM TSLEALDLSN NRLSGSIPVS LQQLSFLSKF 600
  601 SVAYNNLSGV IPSGGQFQTF PNSSFESNHL CGEHRFPCSE GTESALIKRS RRSRGGDIGM 660
  661 AIGIAFGSVF LLTLLSLIVL RARRRSGEVD PEIEESESMN RKELGEIGSK LVVLFQSNDK 720
  721 ELSYDDLLDS TNSFDQANII GCGGFGMVYK ATLPDGKKVA IKKLSGDCGQ IEREFEAEVE 780
  781 TLSRAQHPNL VLLRGFCFYK NDRLLIYSYM ENGSLDYWLH ERNDGPALLK WKTRLRIAQG 840
  841 AAKGLLYLHE GCDPHILHRD IKSSNILLDE NFNSHLADFG LARLMSPYET HVSTDLVGTL 900
  901 GYIPPEYGQA SVATYKGDVY SFGVVLLELL TDKRPVDMCK PKGCRDLISW VVKMKHESRA 960
  961 SEVFDPLIYS KENDKEMFRV LEIACLCLSE NPKQRPTTQQ LVSWLDDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle