YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSBY_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMATATK CMSLNPSPPK LQNQTKSKPF ISLPTPPKPN VSLAVTSTAL AGAVFSSLSY  60
   61 SEPALAIQQI AQLAAANASS DNRGLALLLP IVPAIAWVLY NILQPAINQV NKMRESKGIV 120
  121 VGLGIGGGLA ASGLLTPPPE AYAAAEAAAA SSDSRGQLLL IVVTPALLWV LYNILQPALN 180
  181 QINKMRSGD

Type	Start	End	Confidence
Cytoplasmic	1	40	0.88
Transmembrane Helix	41	60	0.78
Non-Cytoplasmic	61	83	0.82
Transmembrane Helix	84	103	0.90
Cytoplasmic	104	117	0.83
Transmembrane Helix	118	137	0.93
Non-Cytoplasmic	138	155	0.89
Transmembrane Helix	156	176	0.91
Cytoplasmic	177	189	0.90