YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSAL_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASASPMAS QLRSSFSSAS LSQRLAVPKG ISGAPFGVSP TKRVSSFTVR AVKSDKTTFQ  60
   61 VVQPINGDPF IGSLETPVTS SPLIAWYLSN LPGYRTAVNP LLRGVEVGLA HGFFLVGPFV 120
  121 KAGPLRNTAY AGSAGSLAAA GLVVILSMCL TIYGISSFKE GEPSIAPSLT LTGRKKQPDQ 180
  181 LQTADGWAKF TGGFFFGGIS GVTWAYFLLY VLDLPYFVK

Type	Start	End	Confidence
Cytoplasmic	1	103	0.76
Transmembrane Helix	104	122	0.58
Non-Cytoplasmic	123	130	0.45
Transmembrane Helix	131	155	0.86
Cytoplasmic	156	189	0.52
Transmembrane Helix	190	212	0.86
Non-Cytoplasmic	213	219	0.53