YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.98
Transmembrane Helix	55	75	0.85
Non-Cytoplasmic	76	93	0.85
Transmembrane Helix	94	116	0.89
Cytoplasmic	117	183	0.98
Transmembrane Helix	184	206	0.89
Non-Cytoplasmic	207	221	0.84
Transmembrane Helix	222	241	0.89
Cytoplasmic	242	248	0.75
Transmembrane Helix	249	270	0.90
Non-Cytoplasmic	271	298	0.77
Transmembrane Helix	299	321	0.83
Cytoplasmic	322	329	0.55
Transmembrane Helix	330	353	0.86
Non-Cytoplasmic	354	370	0.75
Transmembrane Helix	371	397	0.76
Cytoplasmic	398	417	0.82
Transmembrane Helix	418	442	0.76
Non-Cytoplasmic	443	450	0.78
Transmembrane Helix	451	473	0.90
Cytoplasmic	474	478	0.70
Transmembrane Helix	479	500	0.91
Non-Cytoplasmic	501	507	0.76
Transmembrane Helix	508	529	0.93
Cytoplasmic	530	542	0.84
Transmembrane Helix	543	565	0.85
Non-Cytoplasmic	566	578	0.76
Transmembrane Helix	579	600	0.74
Cytoplasmic	601	807	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERVEASSV PEGENTIEER EVGAMWELEQ KLDQPMDEEA NKLNNMYREK GLSMLMLLRL  60
   61 SFQSLGIVYG DLGTSPLYVF YNTFPDGIDD SEDVIGALSL IIYSLLLIPL IKYVFIVCKA 120
  121 NDNGQGGTLA IYSLLCRHAK VKLIPNQHRS DEDLTTYSRT VSAEGSFAAK TKKWLEGKEW 180
  181 RKRALLVVVL LGTCMMIGDG ILTPAISVLS ATGGIKVNNP KMSGDIVVLV AIVILIGLFS 240
  241 MQHYGTDKVG WLFAPIVLIW FLFIGATGMY NICKYDTSVL KAFSPTYIYL YFKRRGRDGW 300
  301 ISLGGILLSI TGTEALYADI AYFPLLAIQL AFTFFVFPCL LLAYCGQAAY LVIHKEHYQD 360
  361 AFYASIPDSV YWPMFIVATG AAIVGSQATI SGTYSIVKQA VAHGCFPRVK IVHTSKKFLG 420
  421 QIYCPDINWI LMLGCIAVTA SFKKQSQIGN AYGTAVVLVM LVTTLLMVLI MLLVWHCHWI 480
  481 LVLIFTFLSF FVELSYFSAV IFKIDEGGWV PLIIAAISLL VMSVWHYATV KKYEFEMHSK 540
  541 VSMSWILGLG PSLGLVRVPG IGLVYTELAS GVPHIFSHFI TNLPAIHSVV VFVCVKYLPV 600
  601 YTVPEEERFL VKRIGPKTFR MFRCVARYGY KDLHKKDDDF ENKLLTKLSS FIRIETMMEP 660
  661 TSNSSTYSST YSVNHTQDST VDLIHNNNNH NHNNNMDMFS SMVDYTVSTL DTIVSAESLH 720
  721 NTVSFSQDNT VEEEETDELE FLKTCKESGV VHIMGNTVVK ARTGSWLPKK IAIDYVYAFL 780
  781 AKICRANSVI LHVPHETLLN VGQVFYV