YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	36	0.79
Non-Cytoplasmic	37	59	0.78
Transmembrane Helix	60	82	0.83
Cytoplasmic	83	153	0.81
Transmembrane Helix	154	176	0.85
Non-Cytoplasmic	177	195	0.64
Transmembrane Helix	196	215	0.72
Cytoplasmic	216	221	0.41
Transmembrane Helix	222	245	0.88
Non-Cytoplasmic	246	269	0.47
Transmembrane Helix	270	292	0.84
Cytoplasmic	293	298	0.37
Transmembrane Helix	299	322	0.78
Non-Cytoplasmic	323	343	0.53
Transmembrane Helix	344	371	0.73
Cytoplasmic	372	395	0.61
Transmembrane Helix	396	416	0.79
Non-Cytoplasmic	417	424	0.67
Transmembrane Helix	425	447	0.92
Cytoplasmic	448	453	0.67
Transmembrane Helix	454	474	0.92
Non-Cytoplasmic	475	480	0.65
Transmembrane Helix	481	501	0.93
Cytoplasmic	502	516	0.70
Transmembrane Helix	517	537	0.78
Non-Cytoplasmic	538	549	0.67
Transmembrane Helix	550	571	0.49
Cytoplasmic	572	781	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLERLSPRN PVKKESWWTV LTLAYQSLGV VYGDLATSPL YVYKSTFAED ITHSETNEEI  60
   61 FGVLSLIFWT LTLIPLVKYV FIVLRADDNG EGGTFALYSL LCRHARISSL PNFQLADEDL 120
  121 SEYKKNSGEN PMRLKVPGWS LKNTLEKHKF LQNMLLVLAL IGTCMVIGDG VLTPAISVFS 180
  181 AVSGLELSMS KQQHQYVEVP VVCAILILLF SLQHYGTHRL GFVFAPIVLA WLLCISTIGV 240
  241 YNIFHWNPHV YKALSPYYIY KFLKKTRKRG WMSLGGILLC ITGSEAMFAD LGHFTQLSIQ 300
  301 IAFTFAVYPS LILAYMGQAA YLSKHHVLQS DYRIGFYVSV PEQIRWPVLA IAILAAVVGS 360
  361 QAIITGTFSI IKQCTSLGCF PKVKIVHTSS RMHGQIYIPE INWTLMLLCL AVTVGFRDTK 420
  421 HISNASGLAV ITVMLVTTCL MSLVIVLCWR KSSLYALAFI FFFGTIEVLY FSASLIKFLE 480
  481 GAWVPVALSF IFLLIMYVWH YGTLKRYEFD VQNKVSINWL LTLFGSSNLG IVRVHGIGVI 540
  541 NTELVSGIPA IFSHFITNLP AFHQVVVFLC VKSVPVPHVK PEERFLVGRV GPKEYRLYRC 600
  601 IARYGYRDVH KDDVEFENDL ICSIAEFIRS DKPLNYSPDP ENESGINERL TVVAASSSNL 660
  661 EGVQIYEDDG SDKQEPSSSS EVIMVAPSPR FKKRVRFVLP ESARIDRSAE EELTELTEAR 720
  721 EAGMAFIMGH SYVRAKSGSS VMKKIAINFG YDFLRRNSRG PCYGLSTPHA STLEVGMVYI 780
  781 V