YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	41	0.66
Non-Cytoplasmic	42	58	0.75
Transmembrane Helix	59	81	0.82
Cytoplasmic	82	153	0.81
Transmembrane Helix	154	176	0.85
Non-Cytoplasmic	177	195	0.65
Transmembrane Helix	196	216	0.85
Cytoplasmic	217	221	0.58
Transmembrane Helix	222	245	0.88
Non-Cytoplasmic	246	269	0.62
Transmembrane Helix	270	289	0.90
Cytoplasmic	290	300	0.46
Transmembrane Helix	301	322	0.81
Non-Cytoplasmic	323	345	0.59
Transmembrane Helix	346	371	0.82
Cytoplasmic	372	395	0.59
Transmembrane Helix	396	416	0.88
Non-Cytoplasmic	417	424	0.52
Transmembrane Helix	425	447	0.91
Cytoplasmic	448	452	0.51
Transmembrane Helix	453	474	0.90
Non-Cytoplasmic	475	480	0.53
Transmembrane Helix	481	503	0.90
Cytoplasmic	504	534	0.47
Transmembrane Helix	535	554	0.38
Non-Cytoplasmic	555	782	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIESGSYQN AKKESWRTVL TLAYQSLGVV YGDLSISPLY VYKSTFAEDI HHSESNEEIF  60
   61 GVLSFIFWTI TLVPLLKYVF IVLRADDNGE GGTFALYSLL CRHARVNSLP SCQLADEQLI 120
  121 EYKTDSIGSS SMPQSGFAAS LKSTLEKHGV LQKILLVLAL IGTCMVIGDG VLTPAISVFS 180
  181 AVSGVELSMS KEHHKYIELP AACVILIGLF ALQHYGTHRV GFLFAPVILL WLMCISAIGV 240
  241 YNIFHWNPHV YQALSPYYMY KFLKKTQSRG WMSLGGILLC ITGSEAMFAD LGHFSQLSIK 300
  301 IAFTSLVYPS LILAYMGQAA YLSQHHIIES EYNIGFYVSV PERLRWPVLV IAILAAVVGS 360
  361 QAIITGTFSI IKQCSALGCF PKVKIVHTSS KIHGQIYIPE INWILMVLCL AVTIGFRDTK 420
  421 RLGNASGLAV ITVMLVTTCL MSLVIVLCWH KSVIFAIVFV VFFGTIESLY FSASLIKFLE 480
  481 GAWVPIALAF CFLLAMCTWH YGTLKRYEYD VQNKVSVNWL LSLSQTLGIA RVRGLGLIHT 540
  541 ELVSGVPAIF SHFVTNLPAF HQVLVFLCVK SVPVPHVRPQ ERFLVGRIGP KEFRIYRCIV 600
  601 RFGYRDVHKD DFEFEGDLVC SIAEFIRTEA ETAATAAETN GEDDDRMSVV GTCSTYMQGI 660
  661 EDHYESDIDD PDKPGTSEIR SPKPKKKSKS KVKKRVRFVV PETPKIEKET RQELMELTEA 720
  721 REGGVAYIMG NAYMKAKPGS GLLKRLAINI GYEFLRRNTR GPRNMLTSPH ASTLEVGMIY 780
  781 NV