YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	80	0.81
Non-Cytoplasmic	81	94	0.89
Transmembrane Helix	95	117	0.86
Cytoplasmic	118	181	0.97
Transmembrane Helix	182	204	0.88
Non-Cytoplasmic	205	219	0.81
Transmembrane Helix	220	239	0.92
Cytoplasmic	240	248	0.74
Transmembrane Helix	249	268	0.93
Non-Cytoplasmic	269	296	0.82
Transmembrane Helix	297	316	0.93
Cytoplasmic	317	327	0.66
Transmembrane Helix	328	349	0.85
Non-Cytoplasmic	350	369	0.90
Transmembrane Helix	370	396	0.83
Cytoplasmic	397	419	0.89
Transmembrane Helix	420	440	0.81
Non-Cytoplasmic	441	448	0.63
Transmembrane Helix	449	470	0.94
Cytoplasmic	471	476	0.68
Transmembrane Helix	477	498	0.90
Non-Cytoplasmic	499	505	0.73
Transmembrane Helix	506	527	0.92
Cytoplasmic	528	785	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGEEHQIDG DEVNNHENKL NEKKKSWGKL YRPDSFIIEA GQTPTNTGRR SLMSWRTTMS  60
   61 LAFQSLGVVY GDIGTSPLYV YASTFTDGIN DKDDVVGVLS LIIYTITLVA LLKYVFIVLQ 120
  121 ANDNGEGGTF ALYSLICRYA KMGLIPNQEP EDVELSNYTL ELPTTQLRRA HMIKEKLENS 180
  181 KFAKIILFLV TIMGTSMVIG DGILTPSISV LSAVSGIKSL GQNTVVGVSV AILIVLFAFQ 240
  241 RFGTDKVGFS FAPIILVWFT FLIGIGLFNL FKHDITVLKA LNPLYIIYYF RRTGRQGWIS 300
  301 LGGVFLCITG TEAMFADLGH FSVRAVQISF SCVAYPALVT IYCGQAAYLT KHTYNVSNTF 360
  361 YDSIPDPLYW PTFVVAVAAS IIASQAMISG AFSVISQSLR MGCFPRVKVV HTSAKYEGQV 420
  421 YIPEINYLLM LACIAVTLAF RTTEKIGHAY GIAVVTVMVI TTLMVTLIML VIWKTNIVWI 480
  481 AIFLVVFGSI EMLYLSSVMY KFTSGGYLPL TITVVLMAMM AIWQYVHVLK YRYELREKIS 540
  541 RENAIQMATS PDVNRVPGIG LFYTELVNGI TPLFSHYISN LSSVHSVFVL ISIKTLPVNR 600
  601 VTSSERFFFR YVGPKDSGMF RCVVRYGYKE DIEEPDEFER HFVYYLKEFI HHEHFMSGGG 660
  661 GEVDETDKEE EPNAETTVVP SSNYVPSSGR IGSAHSSSSD KIRSGRVVQV QSVEDQTELV 720
  721 EKAREKGMVY LMGETEITAE KESSLFKKFI VNHAYNFLKK NCREGDKALA IPRSKLLKVG 780
  781 MTYEL