YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.92
Transmembrane Helix	19	40	0.80
Non-Cytoplasmic	41	63	0.85
Transmembrane Helix	64	87	0.82
Cytoplasmic	88	154	0.96
Transmembrane Helix	155	177	0.90
Non-Cytoplasmic	178	195	0.86
Transmembrane Helix	196	215	0.88
Cytoplasmic	216	221	0.76
Transmembrane Helix	222	244	0.89
Non-Cytoplasmic	245	269	0.91
Transmembrane Helix	270	291	0.87
Cytoplasmic	292	300	0.69
Transmembrane Helix	301	322	0.87
Non-Cytoplasmic	323	341	0.95
Transmembrane Helix	342	368	0.83
Cytoplasmic	369	388	0.96
Transmembrane Helix	389	413	0.85
Non-Cytoplasmic	414	421	0.79
Transmembrane Helix	422	444	0.93
Cytoplasmic	445	450	0.80
Transmembrane Helix	451	471	0.94
Non-Cytoplasmic	472	478	0.81
Transmembrane Helix	479	498	0.95
Cytoplasmic	499	515	0.86
Transmembrane Helix	516	536	0.81
Non-Cytoplasmic	537	789	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAESGVSP RRNPSQLSWM NLSSNLILAY QSFGVVYGDL STSPLYVFPS TFIGKLHKHH  60
   61 NEDAVFGAFS LIFWTLTLIP LLKYLLVLLS ADDNGEGGTF ALYSLLCRHA KLSLLPNQQA 120
  121 ADEELSAYKF GPSTDTVTSS PFRTFLEKHK RLRTALLLVV LFGAAMVIGD GVLTPALSVL 180
  181 SSLSGLQATE KNVTDGELLV LACVILVGLF ALQHCGTHRV AFMFAPIVII WLISIFFIGL 240
  241 YNIIRWNPKI IHAVSPLYII KFFRVTGQDG WISLGGVLLS VTGTEAMFAN LGHFTSVSIR 300
  301 VAFAVVVYPC LVVQYMGQAA FLSKNLGSIP NSFYDSVPDP VFWPVFVIAT LAAIVGSQAV 360
  361 ITTTFSIIKQ CHALGCFPRI KVVHTSKHIY GQIYIPEINW ILMILTLAMA IGFRDTTLIG 420
  421 NAYGIACMVV MFITTFFMAL VIVVVWQKSC FLAALFLGTL WIIEGVYLSA ALMKVTEGGW 480
  481 VPFVLTFIFM IAMYVWHYGT RRKYSFDLHN KVSLKWLLGL GPSLGIVRVP GIGLVYSELA 540
  541 TGVPAIFSHF VTNLPAFHKV VVFVCVKSVP VPHVSPEERF LIGRVCPKPY RMYRCIVRYG 600
  601 YKDIQREDGD FENQLVQSIA EFIQMEASDL QSSASESQSN DGRMAVLSSQ KSLSNSILTV 660
  661 SEVEEIDYAD PTIQSSKSMT LQSLRSVYED EYPQGQVRRR HVRFQLTASS GGMGSSVREE 720
  721 LMDLIRAKEA GVAYIMGHSY VKSRKSSSWL KKMAIDIGYS FLRKNCRGPA VALNIPHISL 780
  781 IEVGMIYYV