YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	33	0.89
Non-Cytoplasmic	34	50	0.89
Transmembrane Helix	51	73	0.87
Cytoplasmic	74	141	0.98
Transmembrane Helix	142	164	0.93
Non-Cytoplasmic	165	178	0.87
Transmembrane Helix	179	198	0.94
Cytoplasmic	199	205	0.87
Transmembrane Helix	206	227	0.91
Non-Cytoplasmic	228	253	0.88
Transmembrane Helix	254	275	0.90
Cytoplasmic	276	284	0.81
Transmembrane Helix	285	307	0.88
Non-Cytoplasmic	308	328	0.93
Transmembrane Helix	329	354	0.87
Cytoplasmic	355	373	0.95
Transmembrane Helix	374	397	0.90
Non-Cytoplasmic	398	404	0.81
Transmembrane Helix	405	426	0.94
Cytoplasmic	427	435	0.79
Transmembrane Helix	436	458	0.91
Non-Cytoplasmic	459	464	0.81
Transmembrane Helix	465	484	0.95
Cytoplasmic	485	502	0.91
Transmembrane Helix	503	523	0.80
Non-Cytoplasmic	524	541	0.72
Transmembrane Helix	542	560	0.52
Cytoplasmic	561	775	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRRNRCNQ ILLLAYQSFG LVFGDLSISP LYVYKCTFYG GLRHHQTEDT IFGAFSLIFW  60
   61 TITLLSLIKY MVFVLSADDN GEGGIFALYA LLCRHARFSL LPNQQAADEE ISTYYGPGDA 120
  121 SRNLPSSAFK SLIERNKRSK TALLVLVLVG TSMVITIGVL TPAISVSSSI DGLVAKTSLK 180
  181 HSTVVMIACA LLVGLFVLQH RGTNKVAFLF APIMILWLLI IATAGVYNIV TWNPSVYKAL 240
  241 SPYYIYVFFR DTGIDGWLSL GGILLCITGT EAIFAELGQF TATSIRFAFC CVVYPCLVLQ 300
  301 YMGQAAFLSK NFSALPSSFY SSIPDPFFWP VLMMAMLAAM VASQAVIFAT FSIVKQCYAL 360
  361 GCFPRVKIVH KPRWVLGQIY IPEINWVVMI LTLAVTICFR DTRHIAFAFG LACMTLAFVT 420
  421 TWLMPLIINF VWNRNIVFSV LFILFFGTIE LIFVASALVK IPKGGWITLL LSLFFTFITY 480
  481 VWHYGSRKKY LCDQHNKVPM KSILSLGPSL GIIKVPGMGL IYTELASGVP ATFKHFLTNL 540
  541 PAFYQVVVFV CCKTVPIPYV PQKERYLIGR IGPKTYRMYR CIIRAGYKDV NKDGDDFEDE 600
  601 LVMSIAEFIQ LESEGYGGSN TDRSIDGRLA VVKASNKFGT RLSRSISEAN IAGSSRSQTT 660
  661 VTNSKSPALL KLRAEYEQEL PRLSMRRMFQ FRPMDTKFRQ PQVKEELFDL VNAKDAEVAY 720
  721 IVGHGHVKAK RNSVFVKQLV VNVAYSFLRK NCRSPGVMLN IPHICLIKVG MNYYL