YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	43	0.72
Non-Cytoplasmic	44	61	0.78
Transmembrane Helix	62	84	0.78
Cytoplasmic	85	148	0.77
Transmembrane Helix	149	167	0.85
Non-Cytoplasmic	168	168	0.15
Transmembrane Helix	169	183	0.46
Cytoplasmic	184	191	0.32
Transmembrane Helix	192	214	0.76
Non-Cytoplasmic	215	219	0.46
Transmembrane Helix	220	242	0.89
Cytoplasmic	243	265	0.53
Transmembrane Helix	266	287	0.89
Non-Cytoplasmic	288	294	0.65
Transmembrane Helix	295	320	0.84
Cytoplasmic	321	338	0.72
Transmembrane Helix	339	361	0.87
Non-Cytoplasmic	362	391	0.70
Transmembrane Helix	392	412	0.88
Cytoplasmic	413	420	0.61
Transmembrane Helix	421	443	0.91
Non-Cytoplasmic	444	449	0.59
Transmembrane Helix	450	469	0.94
Cytoplasmic	470	477	0.63
Transmembrane Helix	478	499	0.93
Non-Cytoplasmic	500	794	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNLGKCCG SRSSKKESWR SVLLLAYQSL GVVYGDLSIS PLYVFKSTFA EDIQHSETNE  60
   61 EIYGVMSFVF WTLTLVPLLK YVFIVLRADD NGEGGTFALY SLICRHVKVS LLPNRQVSDE 120
  121 ALSTYKLEHP PEKNHDSCVK RYLEKHKWLH TALLLLVLLG TCMVIGDGLL TPAISVFSAV 180
  181 SGLELNMSKE HHQYAVIPIT CFILVCLFSL QHFGTHRVGF VFAPIVLTWL LCISGIGLYN 240
  241 IIQWNPHIYK ALSPTYMFMF LRKTRVSGWM SLGGILLCIT GAEAMFADLG HFNYAAIQIA 300
  301 FTFLVYPALI LAYMGQAAYL SRHHHSAHAI GFYVSVPKCL HWPVLAVAIL ASVVGSQAII 360
  361 SGTFSIINQS QSLGCFPRVK VIHTSDKMHG QIYIPEINWM LMILCIAVTI GFRDVKHLGN 420
  421 ASGLAVMAVM LVTTCLTSLV IVLCWHKPPI LALAFLLFFG SIELLYFSAS LTKFREGAWL 480
  481 PILLSLIFMI IMFVWHYTTI KKYEFDLQNK VSLEWLLALG PSLGISRVPG IGLVFTDLTS 540
  541 GIPANFSRFV TNLPAFHRVL VFVCVKSVPV PFVPPAERYL VGRVGPVDHR SYRCIVRYGY 600
  601 RDVHQDVDSF ETELVSKLAD FIRYDWHKRT QQEDDNARSV QSNESSSESR LAVIGTVAYE 660
  661 IEDNLQPESV SIGFSTVESM EDVIQMAEPA PTATIRRVRF AVEENSYEDE GSTSSAEADA 720
  721 ELRSELRDLL AAQEAGTAFI LGHSHVKAKQ GSSVMKRLAV NFGYNFLRRN CRGPDVALKV 780
  781 PPVSLLEVGM VYVV