YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMA11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.95
Transmembrane Helix	67	88	0.87
Non-Cytoplasmic	89	99	0.76
Transmembrane Helix	100	116	0.76
Cytoplasmic	117	244	0.81
Transmembrane Helix	245	266	0.90
Non-Cytoplasmic	267	280	0.64
Transmembrane Helix	281	304	0.88
Cytoplasmic	305	648	0.76
Transmembrane Helix	649	670	0.94
Non-Cytoplasmic	671	676	0.75
Transmembrane Helix	677	695	0.87
Cytoplasmic	696	712	0.88
Transmembrane Helix	713	736	0.92
Non-Cytoplasmic	737	761	0.91
Transmembrane Helix	762	780	0.87
Cytoplasmic	781	791	0.81
Transmembrane Helix	792	813	0.93
Non-Cytoplasmic	814	822	0.78
Transmembrane Helix	823	845	0.82
Cytoplasmic	846	956	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDKEEVLEA VLKETVDLEN VPIEEVFESL RCSREGLTTE AADERLALFG HNKLEEKKES  60
   61 KFLKFLGFMW NPLSWVMEAA AIMAIALANG GGKPPDWQDF VGIITLLVIN STISFIEENN 120
  121 AGNAAAALMA RLAPKAKVLR DGRWGEQDAA ILVPGDIISI KLGDIVPADA RLLEGDPLKI 180
  181 DQSSLTGESL PVTKGPGDGV YSGSTCKQGE LEAVVIATGV HTFFGKAAHL VDTTNHVGHF 240
  241 QQVLTAIGNF CICSIAVGMI IEIVVMYPIQ HRAYRPGIDN LLVLLIGGIP IAMPTVLSVT 300
  301 MAIGSHRLSQ QGAITKRMTA IEEMAGMDVL CSDKTGTLTL NKLTVDKNLI EVFTKGVDAD 360
  361 TVVLMAAQAS RLENQDAIDA AIVGMLADPK EARAGVREVH FLPFNPTDKR TALTYIDSDG 420
  421 KMHRVSKGAP EQILNLAHNR AEIERRVHAV IDKFAERGLR SLAVAYQEVP EGTKESAGGP 480
  481 WQFMGLMPLF DPPRHDSAET IRRALNLGVN VKMITGDQLA IGKETGRRLG MGTNMYPSSA 540
  541 LLGQHKDESI GALPIDDLIE KADGFAGVFP EHKYEIVKRL QARKHICGMT GDGVNDAPAL 600
  601 KKADIGIAVA DATDAARSAS DIVLTEPGLS VIISAVLTSR AIFQRMKNYT IYAVSITIRI 660
  661 VLGFMLLALI WKFDFPPFMV LIIAILNDGT IMTISKDRVK PSPLPDSWKL SEIFATGVVF 720
  721 GSYMAMMTVI FFWAAYKTDF FPRTFGVSTL EKTAHDDFRK LASAIYLQVS IISQALIFVT 780
  781 RSRSWSYVER PGMLLVVAFI LAQLVATLIA VYANWSFAAI EGIGWGWAGV IWLYNIVFYI 840
  841 PLDIIKFLIR YALSGRAWDL VIEQRVAFTR QKDFGKEQRE LQWAHAQRTL HGLQAPDAKM 900
  901 FPERTHFNEL SQMAEEAKRR AEIARLRELH TLKGHVESVV RLKGLDIETI QQAYTV