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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMA9_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNKDSSWD DIKNEGIDLE KIPIEEVLTQ LRCTREGLTS DEGQTRLEIF GPNKLEEKKE  60
   61 NKVLKFLGFM WNPLSWVMEL AAIMAIALAN GGGRPPDWQD FVGITVLLII NSTISFIEEN 120
  121 NAGNAAAALM AGLAPKTKVL RDGKWSEQEA AILVPGDIIS IKLGDIVPAD GRLLDGDPLK 180
  181 IDQSALTGES LPVTKHPGQE VYSGSTCKQG ELEAVVIATG VHTFFGKAAH LVDSTNQEGH 240
  241 FQKVLTAIGN FCICSIAIGM LIEIVVMYPI QKRAYRDGID NLLVLLIGGI PIAMPTVLSV 300
  301 TMAIGSHRLS QQGAITKRMT AIEEMAGMDV LCSDKTGTLT LNKLTVDKSM VEVFVKDLDK 360
  361 DQLLVNAARA SRVENQDAID ACIVGMLGDP REAREGITEV HFFPFNPVDK RTAITYIDAN 420
  421 GNWHRVSKGA PEQIIELCNL REDASKRAHD IIDKFADRGL RSLAVGRQTV SEKDKNSPGE 480
  481 PWQFLGLLPL FDPPRHDSAE TIRRALDLGV NVKMITGDQL AIGKETGRRL GMGTNMYPSS 540
  541 ALLGQDKDES IASLPVDELI EKADGFAGVF PEHKYEIVKR LQEMKHICGM TGDGVNDAPA 600
  601 LKRADIGIAV ADATDAARSA SDIVLTEPGL SVIVSAVLTS RAIFQRMKNY TIYAVSITIR 660
  661 IVMGFMLLAL IWKFDFSPFM VLIVAILNDG TIMTISKDRV KPSPLPDSWK LKEIFATGVV 720
  721 LGTYLAVMTV VFFWAAESTD FFSAKFGVRS ISGNPHELTA AVYLQVSIVS QALIFVTRSR 780
  781 SWSYVERPGF WLISAFFMAQ LIATLIAVYA NWNFARIRGI GWGWAGVIWL YSIVFYIPLD 840
  841 ILKFIIRYSL SGRAWDNVIE NKTAFTSKKD YGKGEREAQW AQAQRTLHGL QPAQTSDMFN 900
  901 DKSTYRELSE IADQAKRRAE VARLRERHTL KGHVESVVKQ KGLDIEAIQQ HYTL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle