YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY20_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL  60
   61 GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI GGRDGRYYVV SDPNDDNPVN 120
  121 PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV 180
  181 TNIIIHGIHI HDCRPTGNAM VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG 240
  241 LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR 300
  301 HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN 360
  361 WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG VITYNAGALN CRGGRRC

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	417	0.99