YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLY15_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE  60
   61 FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV QMSEQNRTAR RKLGFFSCGT 120
  121 GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR 180
  181 HAVIQEEPLW IVFKRDMVIE LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG 240
  241 LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG 300
  301 STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV 360
  361 NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK RVETDASEWK KWNWRSEGDL 420
  421 LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Type	Start	End	Confidence
Signal Peptide	1	22	0.92
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	470	0.99