YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP28_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEVSEEGR HGKDYVDPPP APLLDMAELK LWSFYRAIIA EFIATLLFLY VTVATVIGHK  60
   61 NQTGPCGGVG LLGIAWAFGG MIFVLVYCTA GISGGHINPA VTFGLFLARK VSLPRAVAYM 120
  121 VAQCLGAICG VGLVKAFMMT PYKRLGGGAN TVADGYSTGT ALGAEIIGTF VLVYTVFSAT 180
  181 DPKRSARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNEKAWDDHW 240
  241 IFWVGPFVGA LAAAAYHQYI LRAAAIKALA SFRSNPTN

Type	Start	End	Confidence
Cytoplasmic	1	33	0.93
Transmembrane Helix	34	57	0.86
Non-Cytoplasmic	58	73	0.79
Transmembrane Helix	74	97	0.86
Cytoplasmic	98	115	0.83
Transmembrane Helix	116	138	0.92
Non-Cytoplasmic	139	157	0.89
Transmembrane Helix	158	178	0.93
Cytoplasmic	179	190	0.89
Transmembrane Helix	191	211	0.89
Non-Cytoplasmic	212	238	0.88
Transmembrane Helix	239	260	0.93
Cytoplasmic	261	278	0.95