YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG  60
   61 HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKVSLVRALG 120
  121 YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS 180
  181 ATDPKRSARD SHIPVLAPLP IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD 240
  241 QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Type	Start	End	Confidence
Cytoplasmic	1	35	0.94
Transmembrane Helix	36	59	0.86
Non-Cytoplasmic	60	75	0.82
Transmembrane Helix	76	99	0.87
Cytoplasmic	100	117	0.80
Transmembrane Helix	118	140	0.91
Non-Cytoplasmic	141	160	0.92
Transmembrane Helix	161	180	0.93
Cytoplasmic	181	192	0.87
Transmembrane Helix	193	213	0.89
Non-Cytoplasmic	214	241	0.88
Transmembrane Helix	242	262	0.95
Cytoplasmic	263	280	0.95