YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDELTEEE SLSGKDYLDP PPVKTFEVRE LKKWSFYRAV IAEFIATLLF LYVTVLTVIG  60
   61 FKSQTDINAG GGACASVGLL GISWAFGGMI FILVYCTAGI SGGHINPAVT FGLFLASKVS 120
  121 LVRAVSYMVA QCLGATCGVG LVKVFQSTYY NRYGGGANML SDGYNVGVGV GAEIIGTFVL 180
  181 VYTVFSATDP KRNARDSHIP VLAPLPIGFS VFMVHLATIP ITGTGINPAR SFGAAVIYNN 240
  241 QKAWDDQWIF WVGPFVGAAI AAFYHQFVLR AGAMKAYGSV RSQLHELHA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.87
Transmembrane Helix	39	61	0.88
Non-Cytoplasmic	62	79	0.75
Transmembrane Helix	80	105	0.77
Cytoplasmic	106	123	0.71
Transmembrane Helix	124	145	0.86
Non-Cytoplasmic	146	165	0.88
Transmembrane Helix	166	186	0.94
Cytoplasmic	187	198	0.90
Transmembrane Helix	199	219	0.88
Non-Cytoplasmic	220	247	0.87
Transmembrane Helix	248	269	0.92
Cytoplasmic	270	289	0.97