YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP25_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKEVVGDKR SFSGKDYQDP PPEPLFDATE LGKWSFYRAL IAEFIATLLF LYVTIMTVIG  60
   61 YKSQTDPALN PDQCTGVGVL GIAWAFGGMI FILVYCTAGI SGGHINPAVT FGLLLARKVT 120
  121 LVRAVMYMVA QCLGAICGVA LVKAFQSAYF TRYGGGANGL SDGYSIGTGV AAEIIGTFVL 180
  181 VYTVFSATDP KRSARDSHVP VLAPLPIGFA VFIVHLATIP ITGTGINPAR SLGAAIIYNK 240
  241 DKAWDHHWIF WVGPFAGAAI AAFYHQFVLR AGAIKALGSF RSQPHV

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	61	0.88
Non-Cytoplasmic	62	81	0.86
Transmembrane Helix	82	105	0.84
Cytoplasmic	106	123	0.79
Transmembrane Helix	124	145	0.92
Non-Cytoplasmic	146	163	0.93
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	198	0.87
Transmembrane Helix	199	219	0.89
Non-Cytoplasmic	220	246	0.88
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	286	0.92