YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP24_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDLDVNES GPPAARDYKD PPPAPFFDME ELRKWPLYRA VIAEFVATLL FLYVSILTVI  60
   61 GYKAQTDATA GGVDCGGVGI LGIAWAFGGM IFVLVYCTAG ISGGHINPAV TVGLFLARKV 120
  121 SLVRTVLYIV AQCLGAICGC GFVKAFQSSY YTRYGGGANE LADGYNKGTG LGAEIIGTFV 180
  181 LVYTVFSATD PKRNARDSHV PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN 240
  241 NEKAWDDQWI FWVGPMIGAA AAAFYHQFIL RAAAIKALGS FGSFGSFRSF A

Type	Start	End	Confidence
Cytoplasmic	1	39	0.92
Transmembrane Helix	40	62	0.88
Non-Cytoplasmic	63	80	0.84
Transmembrane Helix	81	104	0.84
Cytoplasmic	105	124	0.80
Transmembrane Helix	125	146	0.94
Non-Cytoplasmic	147	167	0.92
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	199	0.85
Transmembrane Helix	200	220	0.89
Non-Cytoplasmic	221	248	0.87
Transmembrane Helix	249	269	0.91
Cytoplasmic	270	291	0.89