YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP23_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVEGPDG FQTRDYEDPP PTPFFDAEEL TKWSLYRAVI AEFVATLLFL YVTVLTVIGY  60
   61 KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS GGHINPAVTF GLFLARKVSL 120
  121 IRAVLYMVAQ CLGAICGVGF VKAFQSSHYV NYGGGANFLA DGYNTGTGLA AEIIGTFVLV 180
  181 YTVFSATDPK RNARDSHVPV LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIFNKS 240
  241 KPWDDHWIFW VGPFIGATIA AFYHQFVLRA SGSKSLGSFR SAANV

Type	Start	End	Confidence
Cytoplasmic	1	38	0.83
Transmembrane Helix	39	60	0.89
Non-Cytoplasmic	61	78	0.76
Transmembrane Helix	79	104	0.82
Cytoplasmic	105	122	0.76
Transmembrane Helix	123	144	0.93
Non-Cytoplasmic	145	164	0.91
Transmembrane Helix	165	185	0.92
Cytoplasmic	186	197	0.89
Transmembrane Helix	198	218	0.88
Non-Cytoplasmic	219	245	0.87
Transmembrane Helix	246	267	0.93
Cytoplasmic	268	285	0.95