YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVEAVPG EGFQTRDYQD PPPAPFIDGA ELKKWSFYRA VIAEFVATLL FLYITVLTVI  60
   61 GYKIQSDTDA GGVDCGGVGI LGIAWAFGGM IFILVYCTAG ISGGHINPAV TFGLFLARKV 120
  121 SLPRALLYII AQCLGAICGV GFVKAFQSSY YTRYGGGANS LADGYSTGTG LAAEIIGTFV 180
  181 LVYTVFSATD PKRSARDSHV PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN 240
  241 KSKPWDDHWI FWVGPFIGAA IAAFYHQFVL RASGSKSLGS FRSAANV

Type	Start	End	Confidence
Cytoplasmic	1	39	0.94
Transmembrane Helix	40	62	0.88
Non-Cytoplasmic	63	80	0.86
Transmembrane Helix	81	106	0.82
Cytoplasmic	107	124	0.84
Transmembrane Helix	125	146	0.94
Non-Cytoplasmic	147	166	0.89
Transmembrane Helix	167	187	0.93
Cytoplasmic	188	199	0.89
Transmembrane Helix	200	220	0.88
Non-Cytoplasmic	221	247	0.88
Transmembrane Helix	248	269	0.93
Cytoplasmic	270	287	0.95