YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI  60
   61 ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG 180
  181 AEIIGTFVLV YTVFSATDAK RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS

Type	Start	End	Confidence
Cytoplasmic	1	53	0.83
Transmembrane Helix	54	75	0.86
Non-Cytoplasmic	76	90	0.75
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	132	0.73
Transmembrane Helix	133	154	0.91
Non-Cytoplasmic	155	175	0.88
Transmembrane Helix	176	195	0.92
Cytoplasmic	196	207	0.86
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	255	0.89
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	287	0.90