YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER56_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALKMTISC FLFLQVIYCL LSSFAPTNVQ GLKVGFYDKA CPKAELIVKK SVFEAVKNDR  60
   61 TIAAPLLRMF FHDCFVRGCE GSVLLELKNK KDEKNSIPNL TLRGFEIIDN VKAALEKECP 120
  121 GIVSCSDVLA LVARDAMVAL NGPSWEVETG RRDGLVTNIT EALLNLPSPF NNISSLITQF 180
  181 QSKGLDKKDL VVLSGGHTIG NGHCPQITNR LYNFTGKGDS DPNLDTEYAV KLRGKCKPTD 240
  241 TTTALEMDPG SFKTFDESYF KLVSQRRGLF QSDAALLDNQ ETKSYVLKSL NSDGSTFFKD 300
  301 FGVSMVKMGR IGVLTGQVGE VRKKCRMVN

Type	Start	End	Confidence
Signal Peptide	1	31	0.93
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	329	0.99