YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER55_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIRSDDAKK PMMMWFLGML LFSMVAESNA QLSENYYAST CPSVELIVKQ AVTTKFKQTV  60
   61 TTAPATLRMF FHDCFVEGCD ASVFIASENE DAEKDADDNK SLAGDGFDTV IKAKTAVESQ 120
  121 CPGVVSCADI LALAARDVVV LVGGPEFKVE LGRRDGLVSK ASRVTGKLPE PGLDVRGLVQ 180
  181 IFASNGLSLT DMIALSGAHT IGSSHCNRFA NRLHNFSTFM PVDPTMDPVY AQQLIQACSD 240
  241 PNPDAVVDID LTSRDTFDNS YYQNLVARKG LFTSDQALFN DLSSQATVVR FANNAEEFYS 300
  301 AFSSAMRNLG RVGVKVGNQG EIRRDCSAFN

Type	Start	End	Confidence
Signal Peptide	1	30	0.78
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	330	0.99