YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER54_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTSSSSTC DGFFIISLIV IVSSLFGTSS AQLNATFYSG TCPNASAIVR STIQQALQSD  60
   61 ARIGGSLIRL HFHDCFVNGC DGSLLLDDTS SIQSEKNAPA NANSTRGFNV VDSIKTALEN 120
  121 ACPGIVSCSD ILALASEASV SLAGGPSWTV LLGRRDGLTA NLSGANSSLP SPFEGLNNIT 180
  181 SKFVAVGLKT TDVVSLSGAH TFGRGQCVTF NNRLFNFNGT GNPDPTLNST LLSSLQQLCP 240
  241 QNGSNTGITN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL FSNTGSATVP IVNSFASNQT 300
  301 LFFEAFVQSM IKMGNISPLT GSSGEIRQDC KVVNGQSSAT EAGDIQLQSD GPVSVADM

Type	Start	End	Confidence
Signal Peptide	1	31	0.89
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	358	0.99