YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER53_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTNLPTCD GLFIISLIVI VSSIFGTSSA QLNATFYSGT CPNASAIVRS TIQQALQSDT  60
   61 RIGASLIRLH FHDCFVNGCD ASILLDDTGS IQSEKNAGPN VNSARGFNVV DNIKTALENA 120
  121 CPGVVSCSDV LALASEASVS LAGGPSWTVL LGRRDSLTAN LAGANSSIPS PIESLSNITF 180
  181 KFSAVGLNTN DLVALSGAHT FGRARCGVFN NRLFNFSGTG NPDPTLNSTL LSTLQQLCPQ 240
  241 NGSASTITNL DLSTPDAFDN NYFANLQSND GLLQSDQELF STTGSSTIAI VTSFASNQTL 300
  301 FFQAFAQSMI NMGNISPLTG SNGEIRLDCK KVNGS

Type	Start	End	Confidence
Signal Peptide	1	30	0.75
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	335	0.95