YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER42_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN  60
   61 TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF GLRNFRYIEE IKEALERECP 120
  121 GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF 180
  181 KSIGIDTPGL VALLGSHSVG RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA 240
  241 VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT 300
  301 RAIQILSENN PLTGSKGEIR KQCNLANKNH

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	330	0.99