YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER39_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRFGLALLM ILVIQGLVTF SEAQLKMGFY DQTCPYAEKI VQDVVNQHIN NAPSLAAGLI  60
   61 RMHFHDCFVR GCDGSILINA TSSNQQVEKL APPNLTVRGF DFIDKVKSAL ESKCPGIVSC 120
  121 ADIITLATRD SIVAIGGPTW NVPTGRRDGR ISNFAEAMNN IPPPFGNFTT LITLFGNQGL 180
  181 DVKDLVLLSG AHTIGVSHCS SFSNRLFNFT GVGDQDPSLD SEYADNLKSR RCLSIADNTT 240
  241 KVEMDPGSRN TFDLSYYRLV LKRRGLFESD AALTMNPAAL AQVKRFAGGS EQEFFAEFSN 300
  301 SMEKMGRIGV KTGSDGEIRR TCAFVN

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	326	0.99