YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER21_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAKPFCLL GFFCLLLQLF SIFHIGNGEL EMNYYKESCP KAEEIIRQQV ETLYYKHGNT  60
   61 AVSWLRNLFH DCVVKSCDAS LLLETARGVE SEQKSKRSFG MRNFKYVKII KDALEKECPS 120
  121 TVSCADIVAL SARDGIVMLK GPKIEMIKTG RRDSRGSYLG DVETLIPNHN DSLSSVISTF 180
  181 NSIGIDVEAT VALLGAHSVG RVHCVNLVHR LYPTIDPTLD PSYALYLKKR CPSPTPDPNA 240
  241 VLYSRNDRET PMVVDNMYYK NIMAHKGLLV IDDELATDPR TAPFVAKMAA DNNYFHEQFS 300
  301 RGVRLLSETN PLTGDQGEIR KDCRYVN

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	327	0.99