YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDXK_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPPVLSLA LPSDTGRVLS IQSHTVQGYV GNKSAVFPLQ LLGYDVDPIN SVQFSNHTGY  60
   61 PTFKGQVLNG QQLCDLIEGL EANDLLFYTH VLTGYIGSVS FLDTILEVIN KLRSVNPNLT 120
  121 YVCDPVMGDE GKLYVPEELV HVYREKVVPL ASMLTPNQFE AEKLTGLRIN SEEDGREACA 180
  181 ILHAAGPSKV VITSITIGGI LLLIGSHQKE KGLKPEQFKI LIHKIPAYFT GTGDLMTALL 240
  241 LGWSNKYPDN LDKAAELAVS TLQALLRRTL DDYKRAGYDP TSSSLEIRLI QSQEDIRNPK 300
  301 VELKAERYS

Type	Start	End	Confidence
Signal Peptide	1	20	0.46
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	309	0.91