YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PAO_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD  60
   61 STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN VPTPFQLLGR DLVLWFDRND 120
  121 QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK 180
  181 SPRACAIKFP TMVSQGLLFV WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY 240
  241 DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC 300
  301 YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV 360
  361 PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN KQYTKLTFTP TQADRFVLAF 420
  421 RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK 480
  481 FLVGATVFWA ATAGVPSDVQ IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle